ISSN: 0973-7510

E-ISSN: 2581-690X

B.V.E. Viera1, F. Madayanti1, I.N.P. Aryantha2 and Akhmaloka1
1Biochemistry Research Group, Faculty of Mathematics and Natural Sciences,
Institut Teknologi Bandung, Indonesia.
2Microbiology, Genetics and Molecular Biology Research Group, School of Life Sciences and Technology, Institut Teknologi Bandung, Indonesia.
J Pure Appl Microbiol. 2012;6(2):525-536
© The Author(s). 2012
Received: 16/01/2012 | Accepted: 29/02/2012 | Published: 30/06/2012
Abstract

The succession of eukaryotic communities during traditional composting of domestic waste was analyzed through denaturing gradient gel electrophoresis (DGGE) combined with 18S rRNA gene fragment sequences. The 18S rRNA gene fragments were amplified through culture-independent and culture-dependent approaches. DGGE profiles showed that there were variations of microorganism community profiles during the initial of mesophilic, thermophilic, cooling and maturation phases. Further analysis based on 18S rRNA gene sequence showed that eukaryotic communities observed in the initial mesophilic phase were dominated by Ascomycota in addition of Stramenopiles and Uncultured Eukaryotes. The diversity of eukaryotes decreased at thermophilic phase, in addition dominant bands in mesophilic phase were decreased in the intensity. The number of DGGE bands increased at cooling and maturing phases where some selected bands characterized as Ascomycota, Basidiomycota, Zygomycota, Gymnamoeba, Chlorophyta and Arthropods.

Keywords

Domestic waste, Composting, 18S rRNA, DGGE analysis

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